CDS

Accession Number TCMCG057C03073
gbkey CDS
Protein Id XP_018445721.1
Location join(16376121..16376263,16376368..16376474,16376566..16376760,16376852..16376931,16377015..16377113,16377228..16377324,16377421..16377518,16377665..16377878,16377962..16378105,16378205..16378255,16378357..16378487,16378574..16378612)
Gene LOC108816561
GeneID 108816561
Organism Raphanus sativus

Protein

Length 465aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018590219.1
Definition PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description ATUPF3, UPF3 Smg-4 UPF3 family protein
KEGG_TC -
KEGG_Module M00430        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14328        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009611        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009755        [VIEW IN EMBL-EBI]
GO:0009863        [VIEW IN EMBL-EBI]
GO:0009867        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048571        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATGAAGGACCCTATAGCGAAGAGGAAGGTGGTGGTAAGGCACTTGCCGCCTTCTCTTTCTGAGTCCGATCTCTTATCCCAAATCGACTCTCGTTTCGGTGATCGTTACTATTGGTTCTCCTTTCGTCCTGGCAAGTCCAACTATAAAAGTCAGAAGCATTCACGGGCCTACTTTGGTTTCAAGGCACCAGAAGATGTTTATGACTTTGCTGCCTTTTTCAACGGCCATGTCTTTGTTAATGACAAGGGTGCTCAGTTCAAGGCCATAGTTGAATATGCGCCTTCACAGCGTGTCCCCAAACCATGTGACAAGAAAGATCCTCGTGAAGGCTCTATTACCAAAGACCCTGATTATCTTGAATTCCTTAAGCTTATTTCTCAACCTGTCGAGAATCTCCCCAGTGCTGAAATCCAGTTGGAGAGGAGAGAAGCTGAGCTGTCTGGTGCTTCAAAATCGGCTCCCATTGTTACTCCTCTTATGGAATTCATACGTCAAAAACGTGCTTCTGTGATTGGATCCCAGGGTTTATTGGATGGTCGAAGAGGAGGCAGAAGAGCCAGAGCAGTCTCTGCAAACAAGCCAAGTTCGAGACCTACGAAACGAAACTCTGAAAAGAAAAAGTATGTGGAAAAAGACAATTCAAAAGGTGTGGGCAGCTCCAAGCAAGATTACAATCAGGCAAATTCAAGTGGAAAAGACATACCAGCAACTGAAACTGCCTCTGTCATGGATAGCTCTCTCCCAGGGATTTCATTGACTATGGATTCTGGGAAGAAAAAGATCTTGCTCCTGAAAAAAGACCGTGACAACCCTGTTGAACAGCAGATGGAAGCTAATCTTTCCGGAAGCTCTTCGACTTCAAGGCAGAATCAGAAGATTGATGTTGGTGGGAGGTTGATCAAGGGAATACTTCGGAGAAATGAGACGCGGCCTAGCCAGGCTTCATCTTTTGTCCAGCCTGAGGAAAGAGTGGAACCCACAGAAGCAGAAAACTCCAAGCGTCCTCCTCGGCCATCCAACACTCGAGCAGGGAAAGATTATCATGTTTCTGGTACCAACAGTGAAAAGCTAGAGAGGCGTGCAAGAAACAAGGACAGACCTGATCGTGTTGTGTGGGCTCCTCGCCGGGCTGATGGTTCCAATATCAGCGAGGATCAACCGACATCTTCAGCAGCAAACAATGGAGAAGTGGTGAACTCCTCTGGTGGACACACTCTCGAGAATGGTTCTGCTAGACATTCTAGTCGCCGTAGTGGAGCTCGCAATAGAAAAGAAGACGGCTTTGCCATGACTATTGAGGGTAAAACACCCCGGAGAGGTGGTGGTGGTGGTGGTGGGGGTCCCAGTTCACATGAGAAGCAAAAGTGGATCCAAAAATCATCATCCGGTACTTGA
Protein:  
MMKDPIAKRKVVVRHLPPSLSESDLLSQIDSRFGDRYYWFSFRPGKSNYKSQKHSRAYFGFKAPEDVYDFAAFFNGHVFVNDKGAQFKAIVEYAPSQRVPKPCDKKDPREGSITKDPDYLEFLKLISQPVENLPSAEIQLERREAELSGASKSAPIVTPLMEFIRQKRASVIGSQGLLDGRRGGRRARAVSANKPSSRPTKRNSEKKKYVEKDNSKGVGSSKQDYNQANSSGKDIPATETASVMDSSLPGISLTMDSGKKKILLLKKDRDNPVEQQMEANLSGSSSTSRQNQKIDVGGRLIKGILRRNETRPSQASSFVQPEERVEPTEAENSKRPPRPSNTRAGKDYHVSGTNSEKLERRARNKDRPDRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSARHSSRRSGARNRKEDGFAMTIEGKTPRRGGGGGGGGPSSHEKQKWIQKSSSGT